Most likely what is happening is that these files are being manually updated/edited/uploaded either by using FTP or your web host control panel file manager or you are manually editing these files within the plugin or theme settings. See the AutoRestore|Quarantine Guide forum topic link below and specifically read this help section > “AutoRestore|Quarantine Manual File Editing/Uploading Procedural Steps”.
Please read the top section of the AutoRestore|Quarantine Guide forum topic to this topic/page divider – ### END General Help Info About ARQ IDPS – BEGIN Technical Details About ARQ IDPS ### > https://forum.ait-pro.com/forums/topic/autorestore-quarantine-guide-read-me-first/
Let me know if this is the help info you were looking for or if the issue/problem is being caused by something else.